We can use any languages in knitr, including but not limited to R. Here are some simple demos with Python, Awk, Ruby, Haskell, Bash, Perl, Graphviz, TikZ, SAS and CoffeeScript, etc:
- python.Rmd (output)
- awk.Rmd (output)
- ruby.Rmd (output)
- haskell.Rmd (output)
- bash.Rmd (output)
- perl.Rmd (output)
- dot.Rmd (output)
- tikz.Rmd (output)
- sas.Rmd (output)
- coffeescript.Rmd (output)
These languages are easy to deal with because they can be called by pure command line, e.g.
python -c can execute the code passed in as a character string.
A special engine
cat can be used to save the content of a code chunk to a file using the
cat() function; see the example 095 for an application.
knit_engines stores a series of named functions to handle code from different languages, and you are free to define a function to deal with a custom language. See engine.R for examples on how I deal with Python and Awk.
I do not really know much about other languages, so please feel free to contribute more language engines to knitr.
Note these languages work not only in markdown, but also in other formats like LaTeX.
engine='R' (default), all chunks are executed in separate sessions, so the variables cannot be directly shared. If we want to make use of objects created in previous chunks, we usually have to write them to files (as side effects). For the
bash engine, we can use
Sys.setenv() to export variables from R to bash (example).